š Hello all!
My turn for an introduction. I am a Senior Research Scientist at
Sage Bionetworks. Much of my time is spent as part of the
Human Tumor Atlas Network Data Coordinating Center, where I lead our efforts to curate and share multiple multiplexed imaging modalities from the HTAN atlases through imaging metadata standards, visualisation tools and into NCI CRDC nodes. I am also a part of the
MC2 center led by Sage where we provide data coordination and team science tools and resources to six NCI Division of Cancer Biology programs such as
CCBIR,
CSBC, and
MetNet. MC2 is supporting the continued development of the MCMICRO workflow and its translation to nf-core, starting with contribution of a range of imaging registration, segmentation and quantification processes as nf-core modules. Great progress on this was made during the hackathon. Iām looking forward to championing reproducible and scalable workflows for imaging in a broad range of communities, including with those of you here.