Hello,
Please excuse my limited knowledge with phy...
# phyloplacem
moritz
11/10/2023, 6:04 PMHello,
Please excuse my limited knowledge with phylogenies. I would like to create an MSA of protein (enzyme) sequences and then generate a tree from that. Is this pipeline useful in that scenario or should I jump into the right tools myself? Thanks in advance for any help.
d
Daniel Lundin
11/15/2023, 10:03 AMUnfortunately this pipeline does not create phylogenies, so I'm afraid it can't help you with that. It uses a phylogeny to classify sequences that were not included when tree was made.
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Daniel Lundin
11/16/2023, 8:53 AMTo be a bit more complete: I think there are few projects in which fully automatic estimation of phylogenies would make sense. Hence I wouldn't want to add that to this pipeline nor make a pipeline for that purpose. (I think...)
m
moritz
11/16/2023, 9:01 AMSure, I didn't expect any changes to the pipeline 🙂
d
Daniel Lundin
11/16/2023, 9:02 AMRight, I understood that. It's just that this is actually something I've been thinking about but usually conclude is not a good idea.