tmux new -s mnase
# nextflow run nf-core/mnaseseq -r dev -profile test,uppmax --project snic2017-7-121 -bg
export utrgtf=/crex/proj/sllstore2017018/private/project/Trans_mem/nextflow/assets/nf-core/gtx_update2019.gtf
export fastqdir=/home/binli/memory/ChIPseq2/fastq/
export metadir=/home/binli/memory/ChIPseq2/meta/

module load bioinfo-tools Nextflow/20.10.0
export NXF_HOME=/home/binli/.nextflow
export NXF_SINGULARITY_CACHEDIR=/crex/proj/snic2019-30-56/bingnan/ChIPseq/nfcore_mnase/work/singularity

nextflow run nf-core/mnaseseq \
-r dev \
--input $metadir/samplesheetChIPseq_test2.csv \
--fasta /crex/data/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/WholeGenomeFasta/genome.fa \
--bwa_index /crex/data/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/WholeGenomeFasta/genome.fa \
--skip_trimming \
-profile uppmax \
--project snic2017-7-121 \
-bg \
--gtf $utrgtf \
--max_memory '300.GB' \
--max_time '120.h' \
--max_cpus 20 \
--email_on_fail <mailto:bingnan.li@scilifelab.se|bingnan.li@scilifelab.se>