@Jessica Kan I have a follow up comment on this PR: https://github.com/nf-core/website/pull/4015

OK I caught up! And made my first PR!

If anoyne fancies a first pass review 🙂

Looking at https://github.com/nf-core/website/issues/3944 I can't find documentation about making a PR. Did you mean like to github docs?

Let me have a look, one sec

OK I don't think that page exists yet, Chris split it up into different sections but we don't have a a specific thing for nf-core/configs yet

In this case please update the TODO comment to say 'Make link to a page that needs to be written on reviewing nf-core/config institutiaonl profiles'

Should I make an issue too to make that page?

Not for now, we can leave the issue open - I left a comment accordingly

Issues not closing after PR is merged for some odd reason, will try and clear up

YEah no worries, I'm periodically cleaning those up 🙂

OK <!here> I'm going to quickly clean up the project board and then I need to do the school run so I'll be logging off for the rest of the day! Depending on if/when @Chris Hakkaart can join again, I'll be handing over the torch to him. Otherwise I'll do more reviewing first thing tomorrow morning 💪 Thank you again for the very productive online teamwork here - we are making great progress!

And more memes welcome: https://docs.google.com/presentation/d/1_RIsnSI6l5B3zdmHdhIlZExSU9T7K1LOYXSD9RYbeU0/edit?usp=sharing !!!

NOT BAD!

I see no dead links on https://github.com/nf-core/website/issues/3912. Can someone confirm? I will make a small PR removing todo. Link to page https://docs-v2--nf-core-docs.netlify.app/docs/running/run-pipelines

Quick thought while I'm going out the door @Jessica Kan @Peter Smith @Priyal Tripathi etc, do you fancy tomorrow using a Zoom call or something throughout the day to sit together (as WoKa and Slack huddles were not working for some people)? I feel bad you've been doing all the great work but not even said hello. Give em a thumbs up on this message if you would like to (no obligation though!)

Morning all - I'll be around sporadically today and will try to push some content over the line 🎉 It looks like some great progress already!

Thanks Chris and James for reviewing and for your helpful comments, I’ll be mostly working on another project tomorrow but will swing by to fix one issue or two 😊

You did the hard work :) happy to help

Good morning everyone! I'm in reviewing mode again! As there was interest, due to WorkAdventure not working for everyone as expected, here is a Zoom link for the docs team! It'll be live until about 15:30 CET 🙂 https://eu02web.zoom-x.de/j/69858179147?pwd=N1jPfoCVEC3EsDr6TEyuGbTYo84g81.1 Feel free to join for some company (sitting in silence is completely fine while you work on your issues!) but otherwise put some slack names to faces :)

Otherwise my fist PR for review: https://github.com/nf-core/website/pull/4041 (@mashehu easy one for you if you're around)

and another: https://github.com/nf-core/website/pull/4042

OK people, I've finished cleaning up the board etc! Starting EMEA day 3, we have the following entries on the project board: • 11 Unassigned tasks • 5 in progress • 8 for review (+ 2 without specific issue) • 59 completed 🎉 🎉 🎉 🎉

@Jessica Kan @Kurayi verified, and left some comments on the 2 google-colab issues! Do you think you can still address them ?

<!here> we got through as many issues as we reasonable we can now! No more issues to assign! The remaining TODOs are either unclear, or needs more involved actual testing of code/experimentation by experts, so this can saved for another time. I will try and complete as many reviews as I can now so we have as many merged as possible. For the remainder of the hackathon let's start 'testing' the material and see how well it is working! • If you are new to nf-core: start reading through the 'Getting started section' • If you have some experience with nf-core: start reading through the pages on Running, Developing, Contributing sections Think about readability, understandability, effectiveness. You can also test commands to make sure they are working, and follow links to make sure they work and they make sense. If you have any feedback please make an issue with the

docs-version-2

tag. Or even better: make PRs to fix smaller issues (Typos, dead links). Note a couple of overview pages may be empty, but every other file should have contents! Please shout if something is missing! Otherwise thank you very much to everyone for reaching this milestone 🎉 nf core zoom 🎉 nf core zoom 🎉 nf core zoom 🎉 nf core zoom 🎉 nf core zoom 🎉 nf core zoom 🎉 nf core zoom 🎉

Can someone run https://docs-v2--nf-core-docs.netlify.app/docs/running/advanced-topics/google-colab I crash on

!pip install -q condacolab

import condacolab condacolab.install()

<!here> I 'm jumping over to the meta-pipeline/pipeline chaining 'stand up' meeting now so I've shut down the Zoom call. It was nice to meet you all! I will stay looking at the PR tab until I have to leve in about an ahour. Otherwise thank again for all your hard work 🎉 and hope to see you next time!

Oh and feel free to join #C01QPMKBYNR if you would like to continue helping the docs team (or even join 👀 )

OH AND WE NEED MORE MEMES: https://docs.google.com/presentation/d/1_RIsnSI6l5B3zdmHdhIlZExSU9T7K1LOYXSD9RYbeU0/edit?slide=id.g3cfc5c711a1_0_0#slide=id.g3cfc5c711a1_0_0