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System Property values are not included in the comparison, because they may contain sensitive information like passwords. If you want to include them you need to add them manually as custom values using the build scan API.

See here for an example on how to capture sys props without revealing their actual values, but still being able to find out which props are different: https://github.com/gradle/gradle-enterprise-build-config-samples/blob/main/build-d[…]ystem-properties/gradle-test-execution-system-properties.gradle