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So trying to use the 'testfiles" and  "ignoreTestFiles" option - but it appears I have something wrong. Any help would be appreciated. 
{
  "projectId": "76chwx",
  "baseUrl": "https://ui.qa.someplace.com",
  "testFiles": [
    "api/eComm/*.js",
    "api/giftCard/*.js",
    "api/lodging/*.js",
    "api/oauth/*.js",
    "api/restaurant/*.js",
    "api/retail/*.js",
    "api/settlement/*.js",
    "UI/*.js"
  ],
  "ignoreTestFiles": [
    "api/lodging/authEMV.js",
    "api/restaurant/authEMV.js",
    "api/restaurant/saleDevice.js",
    "api/retail/authDevice.js",
    "api/retail/saleEMV.js"
  ],
  "env": {
    "UI_Url": "https://ui.qa.someplace.com",
    "api_url": "https://api.qa.someplace.com",
    "uat_url": "https://api.uat.someplace.com",
    "login_url": "/login",
    "products_url": "/products",
    "video": "false"
  }
}

Hi <@!909823133379338291> I guess you're missing some * in your file patterns for `testFiles`. Try to add an asterisk in front of `.js`, and your files ending with .js within each of the folder should be visible in the Cypress app 🙂

Thanks - what fixed it was putting the ignore in front of the test files array.