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i was thinking it could be because all the plans run in parallel and the updated data in the outputs doesn't exist at that time

Your thinking is correct. The data source will be read during the plan, but not the apply.

do i have any options here?

You'd need to apply one project before doing a plan of the other projects that depend on it.

that makes sense, can I configure atlantis to do that for these projects or would i need to target plan/apply manually?

I think manually.

dam